Package: LUCIDus 2.2.1

Yinqi Zhao

LUCIDus: Latent Unknown Clustering Integrating Multi-View Data

An implementation of the LUCID model (Peng (2019) <doi:10.1093/bioinformatics/btz667>). LUCID conducts integrated clustering using exposures, omics data (and outcome as an option). An EM algorithm is implemented to estimate MLE of the LUCID model. 'LUCIDus' features integrated variable selection, incorporation of missing omics data, bootstrap inference, prediction and visualization of the model.

Authors:Yinqi Zhao [aut, cre], David Conti [ths], Jesse Goodrich [ctb], Cheng Peng [ctb]

LUCIDus_2.2.1.tar.gz
LUCIDus_2.2.1.zip(r-4.5)LUCIDus_2.2.1.zip(r-4.4)LUCIDus_2.2.1.zip(r-4.3)
LUCIDus_2.2.1.tgz(r-4.4-any)LUCIDus_2.2.1.tgz(r-4.3-any)
LUCIDus_2.2.1.tar.gz(r-4.5-noble)LUCIDus_2.2.1.tar.gz(r-4.4-noble)
LUCIDus_2.2.1.tgz(r-4.4-emscripten)LUCIDus_2.2.1.tgz(r-4.3-emscripten)
LUCIDus.pdf |LUCIDus.html✨
LUCIDus/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/uscbiostats/lucidus/issues

On CRAN:

9 exports 6 stars 1.48 score 52 dependencies 1 mentions 21 scripts 453 downloads

Last updated 2 years agofrom:a4d7aeaefa. Checks:OK: 3 NOTE: 4. Indexed: yes.

Exports:boot_lucidboot.lucidest_lucidest.lucidlucidplot_lucidpredict_lucidsummary_lucidtune_lucid

Dependencies:base64encbootbslibcachemclicodetoolscpp11crayondigestevaluatefastmapfontawesomeforeachfsglassoglmnetgluehighrhmshtmltoolshtmlwidgetsigraphiteratorsjquerylibjsonliteknitrlatticelifecyclemagrittrMatrixmclustmemoisemimemixnetworkD3nnetpkgconfigprettyunitsprogressR6rappdirsRcppRcppEigenrlangrmarkdownsassshapesurvivaltinytexvctrsxfunyaml