roxygen2
issue #1491.slurmr
that overwrites source file when
located in the same folder.get_tmp_path
, get_job_name
, and get_job_id
. This
is a fix for issue #29 (first reported by @thistleknot.)sourceSlurm(plan = "collect")
won't wait forever.
More verbose error messages when Slurm_collect
returns with errors.
The function sacct()
now doesn't fail when accounting is not available.
slurmR now has a Dockerimage that can be used to test with a Slurm cluster. The docker image can be started from within R (if Docker is available).
makeSlurmCluster()
s default tmp_path is now opts_slurmR$get_tmp_path()
.
New functions slurmr_docker_*
provide a wrapper to interact with the
Dockerimage of slurmR.
Minor release.
Added a preamble
option for Slurm batch scripts. This allows the user to
specify commands that need to be added to the script, e.g., module load
.
preamble
can be specified via opts_slurmR$set_preamble()
or directly
when calling Slurm_*apply
.
Added the function opts_slurmR$reset()
.
sourceSlurm()
was using a file created at tempdir()
which was deleted,
and thus, unavailable to be used by sbatch
. Tempfiles like those are now
created at dirname(tempdir())
.Minor release.
Fixed bug when collecting failed jobs. slurmR would fail to correctly list failed jobs and thus to collect outputs. This would also would affect when trying to collect partially resubmitted jobs.
Slurm options passed via opts_slurmR
are now passed to
Slurm_*apply
as documented. Thanks to Gregory Penn (gregorypenn) who
reported the bug.
slurmr_cmd
now expands the cmd_path
.
Increased code coverage.
The function wait_slurm()
is now exported and documented.
Each line in the written R script is now wrapped with a custom
tryCatch
function (tcq
). On error, this new function will collect both
the expression called, the error message, and will quit the R session, so now
the user has a better description of possible errors, e.g. missing
packages.
sluRm
to slurmR
.NEWS.md
file to track changes to the package.