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"Package": "slurmR",
"Title": "A Lightweight Wrapper for 'Slurm'",
"Version": "0.5-4",
"Authors@R": "c( person(\"George\", \"Vega Yon\", email = \"g.vegayon@gmail.com\", role = c(\"aut\",\n\"cre\"), comment = c(ORCID = \"0000-0002-3171-0844\")), person(\"Paul\", \"Marjoram\",\nemail = \"pmarjora@usc.edu\", role = c(\"ctb\", \"ths\"), comment = c(ORCID =\n\"0000-0003-0824-7449\")), person(\"National Cancer Institute (NCI)\", role =\n\"fnd\", comment = \"Grant Number 5P01CA196569-02\"), person(\"Michael\", \"Schubert\",\nrole = \"rev\", comment = c(what = \"JOSS reviewer\", ORCID =\n\"0000-0002-6862-5221\")), person(\"Michel\", \"Lang\", role = \"rev\", comment =\nc(what = \"JOSS reviewer\", ORCID = \"0000-0001-9754-0393\")) )",
"Date": "2023-08-29",
"Description": "'Slurm', Simple Linux Utility for Resource Management\n, is a popular 'Linux' based\nsoftware used to schedule jobs in 'HPC' (High Performance\nComputing) clusters. This R package provides a specialized\nlightweight wrapper of 'Slurm' with a syntax similar to that\nfound in the 'parallel' R package. The package also includes a\nmethod for creating socket cluster objects spanning multiple\nnodes that can be used with the 'parallel' package.",
"License": "MIT + file LICENSE",
"BugReports": "https://github.com/USCbiostats/slurmR/issues",
"URL": "https://github.com/USCbiostats/slurmR, https://slurm.schedmd.com/",
"Encoding": "UTF-8",
"Roxygen": "list(markdown = TRUE)",
"RoxygenNote": "7.2.3",
"VignetteBuilder": "knitr",
"Language": "en-US",
"Repository": "https://uscbiostats.r-universe.dev",
"Date/Publication": "2023-10-25 14:57:39 UTC",
"RemoteUrl": "https://github.com/uscbiostats/slurmr",
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"User": "root"
},
"Author": "George Vega Yon [aut, cre] (ORCID:\n),\nPaul Marjoram [ctb, ths] (ORCID:\n),\nNational Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02),\nMichael Schubert [rev] (what: JOSS reviewer, ORCID:\n),\nMichel Lang [rev] (what: JOSS reviewer, ORCID:\n)",
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"JOB_STATE_CODES",
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"slurm_available",
"Slurm_clean",
"Slurm_collect",
"Slurm_env",
"Slurm_EvalQ",
"Slurm_lapply",
"Slurm_log",
"Slurm_Map",
"Slurm_sapply",
"slurm.conf",
"slurmr_cmd",
"slurmr_docker_pull",
"slurmr_docker_run",
"slurmr_docker_stop",
"snames",
"sourceSlurm",
"squeue",
"status",
"the_plan",
"wait_slurm",
"whoami",
"WhoAmI",
"write_slurm_job"
],
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"title": "Expand Array Indexes",
"topics": [
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]
},
{
"page": "JOB_STATE_CODES",
"title": "Slurm Job state codes",
"topics": [
"JOB_STATE_CODES"
]
},
{
"page": "makeSlurmCluster",
"title": "Create a Parallel Socket Cluster using Slurm",
"topics": [
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"stopCluster.slurm_cluster"
]
},
{
"page": "new_rscript",
"title": "General purpose function to write R scripts",
"topics": [
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]
},
{
"page": "opts_slurmR",
"title": "Get and set default options for 'sbatch' and 'slurmR' internals",
"topics": [
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]
},
{
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],
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]
},
{
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]
},
{
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]
},
{
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"title": "R wrappers for _Slurm_ commands",
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"sacct.default",
"sacct.slurm_job",
"sacct_",
"sbatch",
"sbatch.character",
"sbatch.slurm_job",
"scancel",
"scancel.default",
"scancel.slurm_job",
"SchedulerParameters",
"slurm.conf",
"slurm_available",
"squeue",
"squeue.default",
"squeue.slurm_job",
"submit"
]
},
{
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"title": "Clean a session.",
"concept": [
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"utilities"
],
"topics": [
"Slurm_clean"
]
},
{
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"title": "Collect the results of a slurm job",
"concept": [
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],
"topics": [
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"Slurm_collect.slurm_job"
]
},
{
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"concept": [
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],
"topics": [
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]
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{
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"topics": [
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]
},
{
"page": "slurm_job",
"title": "Creating Slurm jobs",
"topics": [
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"last_submitted_job",
"new_slurm_job",
"print.slurm_job",
"read_slurm_job",
"slurm_job",
"write_slurm_job"
]
},
{
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"concept": [
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"utilities"
],
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"Slurm_log"
]
},
{
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"topics": [
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"Slurm_sapply"
]
},
{
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"title": "A Lightweight Wrapper for 'Slurm'",
"topics": [
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"slurmR"
]
},
{
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"slurmr_docker",
"slurmr_docker_pull",
"slurmr_docker_run",
"slurmr_docker_stop"
]
},
{
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"title": "Full path names for Slurm jobs",
"concept": [
"utilities"
],
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]
},
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"topics": [
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"sourceSlurm"
]
},
{
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"concept": [
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"utilities"
],
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"status",
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"wait_slurm.slurm_job"
]
},
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"concept": [
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],
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}
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