{ "_id": "6a106453acfb0bcc41ca876e", "Package": "modACDC", "Title": "Association of Covariance for Detecting Differential\nCo-Expression", "Version": "2.0.1", "Authors@R": "c(person(given = \"Katelyn\",\nfamily = \"Queen\",\nemail = \"kjqueen@usc.edu\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-8070-3042\")),\nperson(given = \"Joshua\",\nfamily = \"Millstein\", ,\nemail = \"joshua.millstein@usc.edu\",\nrole = c(\"aut\",\"cph\"),\ncomment = c(ORCID = \"0000-0001-7961-8943\")))", "Maintainer": "Katelyn Queen ", "Description": "A series of functions to implement association of\ncovariance for detecting differential co-expression (ACDC), a\nnovel approach for detection of differential co-expression that\nsimultaneously accommodates multiple phenotypes or exposures\nwith binary, ordinal, or continuous data types. Users can use\nthe default method which identifies modules by Partition or may\nsupply their own modules. Also included are functions to choose\nan information loss criterion (ILC) for Partition using\nOmicS-data-based Complex trait Analysis (OSCA) and Genome-wide\nComplex trait Analysis (GCTA). The manuscript describing these\nmethods is as follows: Queen K, Nguyen MN, Gilliland F, Chun S,\nRaby BA, Millstein J. \"ACDC: a general approach for detecting\nphenotype or exposure associated co-expression\" (2023)\n.", "License": "MIT + file LICENSE", "URL": "https://github.com/USCbiostats/ACDC", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "libicu-dev libx11-dev", "Repository": "https://uscbiostats.r-universe.dev", "Date/Publication": "2024-04-09 17:59:27 UTC", "RemoteUrl": "https://github.com/uscbiostats/acdc", "RemoteRef": "HEAD", "RemoteSha": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-08 06:55:38 UTC", "User": "root" }, "Author": "Katelyn Queen [aut, cre, cph] (ORCID:\n),\nJoshua Millstein [aut, cph] (ORCID:\n)", "MD5sum": "bec45dd3a5048b4fba426335b5588729", "_user": "uscbiostats", "_type": "src", "_file": "modACDC_2.0.1.tar.gz", "_fileid": "2db4fd2058b9b8d627f4ad49e89a94c31fda9b805d8683fd33ab3089d8bf8d26", "_filesize": 255503, "_sha256": "2db4fd2058b9b8d627f4ad49e89a94c31fda9b805d8683fd33ab3089d8bf8d26", "_created": "2026-05-08T06:55:38.000Z", "_published": "2026-05-22T14:12:35.265Z", "_distro": "noble", "_jobs": [ { "job": 77397000606, "time": 156, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "6873645721" }, { "job": 77397000299, "time": 124, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "6873636553" }, { "job": 77397000742, "time": 100, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "6873630649" }, { "job": 77397000345, "time": 118, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "6873635236" }, { "job": 77396999108, "time": 210, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6873604457" }, { "job": 77396999684, "time": 121, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7162606026" }, { "job": 77397001236, "time": 102, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "6873632403" }, { "job": 77397001010, "time": 101, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "6873630830" }, { "job": 77397000972, "time": 141, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "6873640727" } ], "_buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/uscbiostats/acdc", "_commit": { "id": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "author": "Katelyn Queen <65574529+katelynqueen98@users.noreply.github.com>", "committer": "GitHub ", "message": "Move hex sticker to the bottom", "time": 1712685567 }, "_maintainer": { "name": "Katelyn Queen", "email": "kjqueen@usc.edu", "login": "katelynqueen98", "orcid": "0000-0002-8070-3042", "uuid": 65574529 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "CCP", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "genieclust", "role": "Imports" }, { "package": "genio", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "partition", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "CCA", "role": "Suggests" } ], "_owner": "uscbiostats", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "katelynqueen98", "count": 97, "uuid": 65574529 }, { "user": "pmarjora", "count": 1, "uuid": 7833774 } ], "_userbio": { "uuid": 10712919, "type": "organization", "name": "USC Division of Biostatistics", "description": "Organization for USC Division of Biostatistics" }, "_downloads": { "count": 241, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/modACDC" }, "_devurl": "https://github.com/uscbiostats/acdc", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/modACDC.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/uscbiostats/acdc", "_realowner": "uscbiostats", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-05-10" }, { "version": "2.0.0", "date": "2024-01-25" }, { "version": "2.0.1", "date": "2024-01-30" } ], "_exports": [ "ACDC", "ACDChighdim", "ACDCmod", "coVar", "GCTA_par", "GCTA_parPlot", "GCTA_singleValue", "OSCA_par", "OSCA_parPlot", "OSCA_singleValue" ], "_help": [ { "page": "ACDC", "title": "ACDC", "topics": [ "ACDC" ] }, { "page": "ACDChighdim", "title": "ACDChighdim", "topics": [ "ACDChighdim" ] }, { "page": "ACDCmod", "title": "ACDCmod", "topics": [ "ACDCmod" ] }, { "page": "coVar", "title": "coVar", "topics": [ "coVar" ] }, { "page": "GCTA_par", "title": "GCTA_par", "topics": [ "GCTA_par" ] }, { "page": "GCTA_parPlot", "title": "GCTA_parPlot", "topics": [ "GCTA_parPlot" ] }, { "page": "GCTA_singleValue", "title": "GCTA_singleValue", "topics": [ "GCTA_singleValue" ] }, { "page": "OSCA_par", "title": "OSCA_par", "topics": [ "OSCA_par" ] }, { "page": "OSCA_parPlot", "title": "OSCA_parPlot", "topics": [ "OSCA_parPlot" ] }, { "page": "OSCA_singleValue", "title": "OSCA_singleValue", "topics": [ "OSCA_singleValue" ] } ], "_readme": "https://github.com/uscbiostats/acdc/raw/HEAD/README.md", "_rundeps": [ "bit", "bit64", "CCP", "cli", "clipr", "codetools", "cpp11", "crayon", "data.table", "deadwood", "doParallel", "dplyr", "farver", "forcats", "foreach", "generics", "genieclust", "genio", "ggplot2", "glue", "gtable", "hms", "infotheo", "isoband", "iterators", "labeling", "lifecycle", "magrittr", "MASS", "partition", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "quitefastmst", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "readr", "rlang", "S7", "scales", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr" ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "modacdc", "_universes": [ "uscbiostats", "katelynqueen98" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.1", "date": "2026-05-08T06:58:05.000Z", "distro": "noble", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "b2829d9a579351f7c08076510370b1225436d538a97d273408dd6b39d6198735", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" }, { "r": "4.6.0", "os": "linux", "version": "2.0.1", "date": "2026-05-08T06:57:35.000Z", "distro": "noble", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "f8c45dcfc57b2c80db8b61ba07dc31a05ad7248fbb401dc1d215a8555828c139", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" }, { "r": "4.5.3", "os": "mac", "version": "2.0.1", "date": "2026-05-08T06:57:16.000Z", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "121cc7f05ca09075890c746872be0bc8631c1e8b91ce250b344e3c58c0f3a4c9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" }, { "r": "4.6.0", "os": "mac", "version": "2.0.1", "date": "2026-05-08T06:57:31.000Z", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "a2c99f23fb013317e818d9cf36eb09d584d5892c133b08040d45cae426f15c9c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" }, { "r": "4.7.0", "os": "win", "version": "2.0.1", "date": "2026-05-08T06:57:01.000Z", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "42e948bfde21353ac9e84c07984546053529cafba2625033e82201d2e049915d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" }, { "r": "4.5.3", "os": "win", "version": "2.0.1", "date": "2026-05-08T06:56:56.000Z", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "86bac3e017d7d6445addb55124f5fb9cd0cf5c1964db85280649b06cee6c8800", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" }, { "r": "4.6.0", "os": "win", "version": "2.0.1", "date": "2026-05-08T06:57:42.000Z", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "6b8806a687717d38ddadeda8c459ebb07e4a84193c3d56bd48bc4b0e09073409", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.1", "date": "2026-05-22T14:12:11.000Z", "commit": "4d535285fc8394f0691f91d2a860ef4a14b85a8f", "fileid": "2866fa0afc3976db089b4e70d72df30335233f19b919618bf67c0ff4614665f1", "status": "success", "buildurl": "https://github.com/r-universe/uscbiostats/actions/runs/25541614979" } ] }