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"page": "get_z", "title": "Get transformed statistics: z, or Xty", "topics": [ "get_z" ] }, { "page": "GTEx.PrCa", "title": "Real data for selecting the genes on chromosome 10 for the risk of prostate cancer", "topics": [ "GTEx.PrCa", "GTEx.PrCa.Amatrix", "GTEx.PrCa.betas.gwas", "GTEx.PrCa.betas.se.gwas", "GTEx.PrCa.Geno", "GTEx.PrCa.inclusion.indicator", "GTEx.PrCa.IVWmarginal.A", "GTEx.PrCa.maf.gwas", "GTEx.PrCa.marginal.A", "GTEx.PrCa.marginal.A.se", "GTEx.PrCa.marginal.selected", "GTEx.PrCa.pvalues.gwas", "GTEx.PrCa.rsid" ] }, { "page": "hJAM", "title": "hJAM Fit hJAM with linear regression", "topics": [ "hJAM" ] }, { "page": "hJAM_egger", "title": "hJAM_egger Fit hJAM with Egger regression", "topics": [ "hJAM_egger" ] }, { "page": "JAM_A", "title": "Compute conditional A matrix", "topics": [ "JAM_A" ] }, { "page": "JAM_alphas", "title": "Compute conditional alphas", "topics": [ "JAM_alphas" ] }, { "page": "LogisticToLinearEffects", "title": "Transform log odds ratios to linear 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"print.hJAM" ] }, { "page": "print.hJAM_egger", "title": "Print out for hJAM_egger", "topics": [ "print.hJAM_egger" ] }, { "page": "print.SHAJAM", "title": "Print out for SHA-JAM", "topics": [ "print.SHAJAM" ] }, { "page": "SHAJAM", "title": "SHA-JAM Fit SHA-JAM", "topics": [ "SHAJAM" ] }, { "page": "SNPs_heatmap", "title": "Heatmap for all the SNPs used in the analysis", "topics": [ "SNPs_heatmap" ] }, { "page": "SNPs_scatter_plot", "title": "Scatter plot for SNPs vs. one intermediate in the analysis", "topics": [ "SNPs_scatter_plot" ] }, { "page": "susie_get_posterior_mean_v2", "title": "Get SuSiE posterior mean", "topics": [ "susie_get_posterior_mean_v2" ] }, { "page": "susie_get_posterior_sd_v2", "title": "Get SuSiE posterior sd", "topics": [ "susie_get_posterior_sd_v2" ] }, { "page": "susieJAM_A", "title": "Compute conditional A using SuSiE JAM", "topics": [ "susieJAM_A" ] }, { "page": "susieJAM_alphas", "title": "Compute conditional alphas using SuSiE JAM", "topics": [ 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