Package: LUCIDus
Type: Package
Title: Latent Unknown Clustering Integrating Multi-View Data
Version: 2.2.1
Authors@R: c(
    person(given = "Yinqi", family = "Zhao", 
           email = "yinqiz@usc.edu", 
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2413-732X")),
    person(given = "David", family = "Conti", 
           email = "dconti@usc.med.edu", role = "ths",
           comment = c(ORCID = "0000-0002-2941-7833")),
    person(given = "Jesse", family = "Goodrich", 
           role = "ctb",
           comment = c(ORCID = "0000-0001-6615-0472")),
    person(given = "Cheng", family = "Peng", role = "ctb")
  )
Description: An implementation of the LUCID model (Peng (2019)
        <doi:10.1093/bioinformatics/btz667>). LUCID conducts integrated
        clustering using exposures, omics data (and outcome as an
        option). An EM algorithm is implemented to estimate MLE of the
        LUCID model. 'LUCIDus' features integrated variable selection,
        incorporation of missing omics data, bootstrap inference,
        prediction and visualization of the model.
Depends: R (>= 3.6.0)
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.1
LazyData: true
URL: https://github.com/USCbiostats/LUCIDus
BugReports: https://github.com/USCbiostats/LUCIDus/issues
Suggests: knitr, testthat (>= 3.0.0), rmarkdown
VignetteBuilder: knitr
Config/testthat/edition: 3
Imports: boot, glasso, glmnet, jsonlite, mclust, mix, networkD3, nnet,
        progress
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev
Repository: https://uscbiostats.r-universe.dev
Date/Publication: 2026-04-07 17:30:04 UTC
RemoteUrl: https://github.com/uscbiostats/lucidus
RemoteRef: HEAD
RemoteSha: 44a42cf8de49174ffeb2a20da6de08505072b841
NeedsCompilation: no
Packaged: 2026-06-06 06:22:00 UTC; root
Author: Yinqi Zhao [aut, cre] (ORCID: <https://orcid.org/0000-0003-2413-732X>),
  David Conti [ths] (ORCID: <https://orcid.org/0000-0002-2941-7833>),
  Jesse Goodrich [ctb] (ORCID: <https://orcid.org/0000-0001-6615-0472>),
  Cheng Peng [ctb]
Maintainer: Yinqi Zhao <yinqiz@usc.edu>